yup, in fact most of the pro engine tuners prefer to have short stroke and bigger bore. Reason is simple, higher rev and able to accomodate bigger valves. jackrod kit is good in a way to make engine feel more torquey at lower rev (higher momentum). Good for daily usage, but bad for racing application.  Another benefit of long stroke engine is lower weight and material used compare to bigger bore of the same cc. For the sake of cost saving and fc, many car manufacturers go for long stroke, but it is not so good for bike which needs to rev high to gain power.

Nice link there, that simulation just show some color and some reliability number without giving the exact figure like 3.5kft/min, waiting for your 200km tips also. omg
http://www.automationgame.com/about/
screenshot one of the engine design interface here.[attachmentid=4481299]
on the right, got some green logo, such as piston, conrod, knocking and etc. when turn into slight yellow, means slight reliability issue (reliability number will reflect), then it will start to turn yellow, orange and finally red.