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 Academic Research Thread, MPhil/PhD candidate/holder welcome!

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[PF] T.J.
post Apr 8 2012, 10:56 PM

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QUOTE(astral_traveller @ Apr 8 2012, 05:23 PM)
UM  smile.gif
*
laugh.gif
Same same, under Insitute of Biological Sciences? hmm.gif
[PF] T.J.
post Apr 10 2012, 12:25 AM

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QUOTE(astral_traveller @ Apr 9 2012, 09:17 AM)
Mushroom Biotechnology Research Unit (MBioRU)  tongue.gif

and you?  smile.gif
*
Hmm, under Prof. Noorlidah/ Viki? Not really familiar with that unit haha
I'm under the Institute of Ocean and Earth Sciences (IOES) at IPS laugh.gif
[PF] T.J.
post Apr 11 2012, 06:35 PM

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QUOTE(astral_traveller @ Apr 10 2012, 09:41 AM)
you know Dr. Noorlidah and Dr. Vikineswary? haha

I dont have friends from IOES lol tongue.gif
*
Yup, I know them tongue.gif

Anyway, to keep on topic, anyone knows whether there are any ways to check the tier (ranking) of journals (WoS) without the need to search the journal citations index using our library cards? hmm.gif
[PF] T.J.
post Apr 12 2012, 09:18 AM

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Oh ya, not sure if this is the right place to ask, but I was wondering whether there's anyone here that is familiar with phylogenetics? Maybe we can meet up and exchange ideas/ techniques? notworthy.gif notworthy.gif
[PF] T.J.
post Apr 12 2012, 03:00 PM

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QUOTE(Human Nature @ Apr 12 2012, 11:20 AM)
Tiering/Ranking is unique to each institution. In this case, you need to refer to your university for the tiering master list. I think you are referring to impact factor, citations?
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Wow, I din't know that doh.gif
You mean different journals will have different rankings, impact factor etc. in different institutions? shocking.gif
[PF] T.J.
post Apr 12 2012, 04:23 PM

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QUOTE(Human Nature @ Apr 12 2012, 03:52 PM)
No, tiering is by the institution, usually used for publication reward or promotion among the academicians. While the Impact factor indicator is carried out by thomson ISI. In most cases, the tiering done by the institution is simply based on the impact factor.
*
I see, thanks for the explanation bro! notworthy.gif notworthy.gif
Learnt something new today laugh.gif laugh.gif
[PF] T.J.
post Apr 15 2012, 06:05 PM

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QUOTE(alexkos @ Apr 13 2012, 11:18 PM)
just submitted an edited conceptual paper today for 2nd time review =)

so sad lo, the journal i'm submitting are lower tiers
*
Q2 bro?
Nvm bro, we all have to start from somewhere icon_rolleyes.gif
Grats and keep up the good work!
[PF] T.J.
post Apr 16 2012, 01:14 AM

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QUOTE(Mr.Wang @ Apr 15 2012, 07:41 PM)
where to view the journal tier?
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As stated by Human Nature, rankings are categorized by institutions themselves, so it depends on where you're studying.
For UM, the rankings can be easily accessed using a library card > Web of Science > Journal Citation Reports nod.gif
[PF] T.J.
post Apr 18 2012, 06:18 PM

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QUOTE(Imaizumi @ Apr 18 2012, 02:39 PM)
Hi all.
I heard somewhere that if you get first class for your degree you can apply for PHD. Is it true?
If it does which university (local and internationally)?
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Yea, there is such a thing, I'm one of those candidates haha laugh.gif
For direct phD research candidates... they are required to undergo a thesis defense after 2 semesters, to see whether they are worthy of direct phD
[PF] T.J.
post Apr 18 2012, 06:19 PM

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QUOTE(Mr.Wang @ Apr 18 2012, 03:55 PM)
true. i know ipta got, but not sure about ipts or overseas
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QUOTE(Human Nature @ Apr 18 2012, 06:16 PM)
The paper that you submitted 6 days ago? That's very fast.
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Wow!~! Grats grats notworthy.gif notworthy.gif
How many papers already? thumbup.gif
[PF] T.J.
post Apr 28 2012, 01:58 AM

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QUOTE(LoveMeNot @ Apr 28 2012, 01:09 AM)
I know myself. I am procrastinating. I know I am holding back. But then still, I am not moving forward. Hope to join you guys in discussion in the future when I'm truly a PhD candidate.
you are right. I am working, and work is hectic like hell. I find it hard to focus on two main important matters. And I can't let go of my job just to pursue my PhD.
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I feel you bro, its not easy to return to studies once you've start to work sad.gif
[PF] T.J.
post Aug 15 2012, 10:54 AM

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QUOTE(Human Nature @ Aug 1 2012, 12:05 PM)
Yes, definitely. They will want others to cite their papers too. Some will responds, some not maybe due to change of working place/email, or simply too busy.
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+1, nicely said thumbup.gif

Just remember to be courteous when asking for a copy laugh.gif


Added on August 15, 2012, 10:55 am
QUOTE(alexkos @ Aug 7 2012, 11:14 PM)
yes I also tried to contact some notable scholars in my field, I'm really encouraged to see their email replies.

I actually do more than asking for full-length paper. I was asking him questions! hhaa
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Done that too, most of them never replied me even though they encourage questions sad.gif

This post has been edited by [PF] T.J.: Aug 15 2012, 10:55 AM
[PF] T.J.
post Sep 23 2012, 11:35 AM

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QUOTE(alexkos @ Sep 16 2012, 09:13 PM)
Hi how's everyone doing here? I passed my first proposal defense. Now in data collection stage =)
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Grats man~ that's good to hear notworthy.gif

I've already published two Q1 papers, with 3 more on the way.
Plan to graduate next year haha, damn scholarship, they pay students for 3 years, but stop paying if the student graduate early, pretty ridiculous doh.gif
[PF] T.J.
post Dec 1 2012, 10:08 PM

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QUOTE(alexkos @ Oct 28 2012, 08:44 PM)
you're so good in your progress. My data collection is now nearly 600 surveys, still need at least 300 samples. Oh...
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All the best man, you can do it! notworthy.gif notworthy.gif
[PF] T.J.
post Dec 1 2012, 10:09 PM

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QUOTE(capricorn89 @ Nov 4 2012, 01:50 AM)
Hi everyone. I'm new here. Purposely register just to participate in this topic.

I will start my postgrad life soon. Currently have already got 2 offers from UM. Really dont know which one to choose, either bioinformatics field on microbiology research (mostly dry lab) or molecular genetic dealing with cancer research.

anyone on the same field? I will start as a RA first hopefully next year Februally can register as full-time master student.

Thanks in advanced.
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Welcome to the thread notworthy.gif notworthy.gif
Just wondering, who are you working under? laugh.gif
The most important thing in pursuing Masters or phD degrees is that you choose the right supervisor with a good lab environment (assuming you are taking Masters by research here) laugh.gif

[PF] T.J.
post Dec 2 2012, 10:52 AM

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QUOTE(Critical_Fallacy @ Dec 2 2012, 02:27 AM)
It's a good motivational anecdote to capricorn89, and it can be better when you tell that “Right Supervisor” is like what?, and What kind of good lab environment is that environment? Maybe you can define the factors as well.

Very likely capricorn89 will treat you with more respect, when you share your beliefs and values later on what’s important to you about having the right supervisor with a good lab environment.
*
Haha, thanks man notworthy.gif
Din't elaborate more because I'm not sure whether capricorn89 would come back or not haha laugh.gif

Well, the "right" supervisor will want the best for his/her students, and willing to help them out (and putting their progress as 1st priority) instead of leaving students to handle their own project (and eventually scolding them for messing up the projects laugh.gif). Unfortunately quite a lot of supervisors are like that, so one has to be smart, and do a little bit of survey (asking the potential supervisor's students would be a great way of starting) before joining the research team. The "right supervisor" should have a grant with sufficient money; and also a well-equipped lab to support his/her students' researches. And of course, he or she should have ample of knowledge regarding the field laugh.gif

A good lab environment includes: good and well-maintained facilities, well-managed purchasing systems, safe etc. But I guess the most important thing is the students/ researchers etc. in the lab. If the research team is good. helpful and efficient. Students will be more encouraged to push on with their research. Again, unfortunately there are alot of backstabbing (so I've heard) and stealing in many labs doh.gif
[PF] T.J.
post Jan 2 2013, 10:05 AM

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QUOTE(Ivangile @ Jan 1 2013, 10:24 PM)
Hi all, may I know if anyone use these software before can state the advantages and disadvantages.

R (S)
SPSS
SAS
Python
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I'm not a statistician, but I've learnt abit on R and SPSS.
Not sure what you mean by R "(S)" hmm.gif
R is a command based program and the learning curve is very steep... but it will be very flexible once you get the hang of all the commands tongue.gif And since R is often updated with extra packages, it can cover a wide range of applications, such as phylogenetics for my case.

SPSS has a user interface which is a bit more easier if you ask me laugh.gif
But then of course its better to have someone teach you how to use it rather than trying everything out yourself rclxub.gif
[PF] T.J.
post Jan 3 2013, 10:58 PM

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QUOTE(Ivangile @ Jan 2 2013, 09:34 PM)
Oh, so you are in phylogenetics field? (Taxo, popgen, quantitative, epidemiology?) Do you really use biostatistics in research, I find a lot of biological research with untreated result. Erm, is biologist generally not good in math xD

R is an application of S language actually, that's why I put (S). Thank you for the input! In view of flexibility, I think I am just going to go with R.


Added on January 2, 2013, 9:36 pmJust an addon, anyone here doing System Biology or Computational Biology?
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Yup, phylogenetics. Although my main project is mainly on phylogenetics... I am working on other manuscripts which involves seaweed spore cultivation and growth which will definitely need biostatistics sad.gif
Yeah, you can say that most biologists are not good in maths... all the good ones went to physics or engineering already tongue.gif

Well, I guess if you are good at program language, R will be interesting, if not fun for you laugh.gif
Not sure whether you are new to R or not. You can take a look at a book called "An Introduction to "R"" for starters...
You might wanna check out this blog here from Dr. Khang Tsung Fei of UM's Bioinformatics department, he is one of the few experts that is really good at using "R", and not to mention very good at teaching as well hehe~
http://khanglab.wordpress.com/author/tfkhang/


Added on January 3, 2013, 11:12 pm
QUOTE(Critical_Fallacy @ Jan 3 2013, 03:46 AM)
Hi Dr PF T.J.

The increasing number of biotech enterprises in Malaysia is likely to create a need for Bio-engineers in the years to come. Could you tell us what kind of meaningful research contribution you are currently making that brings credit and prestige to Malaysia, especially in the Biotechnology Sector?

(1) Do you carry out Bio-energy research on living organisms that power micro electrical devices?

(2) Do you cultivate some kind of new Bio-farming that is more sustainable alternative to milk, chicken, pork and beef?

(3) Do you build any Biological robots using heart cells of small animals that will get sensor-like qualities?

(4) Do you create synthetic life form that combines advances in 3D printing with biosynthesis and molecular construction, by developing one single machine that can “print” drugs by carefully combining nucleotides, sugars and amino acids?
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Not Dr. yet tongue.gif

Unfortunately its not always the Bells and Whistles you hear for the biotech sectors, or any other biological sectors tongue.gif

My project is pretty simple and not fancy at all, which is to find out better strains of carrageenan-producing seaweeds (commonly known as seabird's nest) for cultivation and higher yields~
I guess most people do not know what carrageenan is although they are using it everyday haha, carrageenan is basically something like agar (gel) highly valued its thickening, emulsifying and gelling properties. It is widely used in cosmetics, ice cream, fruit juices, milk, lubricants, shampoo, toothpaste etc. etc. (Did I mention its the substitute for "Shark-fin" in Shark fin soups nowadays? tongue.gif)

Me and my supervisors, in collaboration with the Department of Fisheries, will publish a booklet that will hopefully help local seaweed farmers plant and manage their farms better to increase production and income (which will help out the local community. Most seaweed farmers in Sabah are very poor).

Of all the 4 you've listed out.
The Institute that I'm in is only working on the 1st one... in which there are researches on producing biofuel from microalgae (which I'm not involved in haha) tongue.gif

This post has been edited by [PF] T.J.: Jan 3 2013, 11:12 PM
[PF] T.J.
post Jan 4 2013, 01:10 AM

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QUOTE(Critical_Fallacy @ Jan 4 2013, 12:10 AM)
PF T.J.

» Click to show Spoiler - click again to hide... «

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Thanks for the reply laugh.gif
I apologize but I'm not very sure what you are on about tongue.gif

These Seabird's Nests are already been used as SharkFin soup substitutes in most restaurants as we speak laugh.gif
For those who really want real Sharkfin, they will have to get them illegally..
These Seabird's Nest (Scientific names: Genus Kappaphycus and Eucheuma) are already extensive cultivated throughout the globe, and are the top carrageenan producers worldwide. The only problem we have now is poor farm management and technology (and of course corruption tongue.gif). As preliminary work, we hope to be able to better educate our local farmers to increase their farming efficiency and production, which will in turn help give them a better life.

Still, I agree with you on your Example. Its a good idea to introduce the consumption of raw Seabird's Nest to Malaysians. The Sabah people eat them all the time, but since cultivation of these seaweeds in the Peninsular is pretty limited, most people have no idea what these SeaBird's Nests are. (I've attached a photo below for people who are curious laugh.gif)

Kappaphycus alvarezii:
» Click to show Spoiler - click again to hide... «


Kappaphycus striatum:
» Click to show Spoiler - click again to hide... «

(Beautiful, aren't they? Can be brown, yellow, red, pink, purple in color too)

Can Malaysia produce the kind of seaweed better than Japanese Nori?
Good question haha, I guess it depends on people's taste. Apart from the carrageenan used in ice cream, fruit juices etc. We are starting to see more raw food/drinks made from SeaBird's Nest. But I doubt at this stage they can compete with Nori at all because of the different texture and taste laugh.gif

The SeaBird's Nest drink is a recent example, and can be found in many cafes now:
» Click to show Spoiler - click again to hide... «


An of course, the very popular SeaBird's Nest dish in Sabah (those who have been to Tawau and Semporna will probably have tried it before):
» Click to show Spoiler - click again to hide... «


Can we have Family-Friendly Farming of Seaweed for small consumption?
Most of the farmers in Sabah consist of the entire family laugh.gif
And the harvested plants are measured in tonnes tongue.gif
If you are referring to rearing in aquariums, its not a problem as well as long as its a marine environment (like those used to rear marine fishes), after it grows up (it only takes 30-45 days to reach around 1m in the sea), can display or eat brows.gif

Can you think of something that expand the seabird's nest to other widely-accepted applications?
I think it is already very widely applied haha... the products are mentioned in the earlier post~
Its because of its extensive applications that these seaweeds are so widely cultivated. Taking them as food is only a very minor "application"

If your method is patentable, have you filed any patent application for the efficient Seaweed Farming process?
I don't my findings are worth patenting haha~

Sorry for the long post icon_rolleyes.gif
**I guess I should promote more on SeaBird's Nest in my blog (thanks for the inspiration! haha)

This post has been edited by [PF] T.J.: Jan 4 2013, 01:12 AM
[PF] T.J.
post Jan 4 2013, 01:16 AM

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QUOTE(Ivangile @ Jan 4 2013, 12:37 AM)
Thank you for the blog, will read it when I have got the time to.

Anyway, regarding my second question, is there any one in UM are expert and opening system biology/computational biology PhD position?

And kaypo a bit, how's UM research? Do they rely on biostatistics to treat their data? Or just DATA?
*
Sorry man, can't really comment on the 2nd question since I'm not familiar with the field sad.gif

Like all universities (regardless of whether its ranked No.1 or not), they all have certain fields that they are strong at... so my answer is that it depends.. certain part of UM's research is good, others not good at all. Again I can't really comment since I only know the Bio- side of things tongue.gif
But when it comes to ethics and attitude, definitely we lose... by a huge margin

Yeah, we do apply biostatistics to analyse the data whenever necessary (assuming that was your question) notworthy.gif

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